species:   Scscl
pid:       PID1574
parent:    Ssc-milR-50
paralog:   
locus:     NW_001820814.1:538274-538345
matures:   ['UCCUUUGUAUAGAGCUUCGUGC', 'AUGAAGGUCUAUAUAGUCAGAAC']
srr:       SRR12527894
genome:    /Users/jax/+Genomes/Fungal_genomes/Scscl.GCF_000146945.2_ASM14694v2.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527894.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Xia2020-rh.SRR12527894.cram NW_001820814.1:538274-538345

0 out of bounds
3 alignments
1 proper strand
1 stranded perfect matches

          *************************   ************************          
AAAAUCCAUAGCAUGAAGGUCUAUAUAGUCAGAACGGAUUUCCUUUGUAUAGAGCUUCGUGCUCAAGAUUAA
..((((...(((((((((.(((((((((...(((.....)))..))))))))).)))))))))...))))..
----------------------------------------UCCUUUGUAUAGAGCUUCGUGC---------- l=22 a=0 c
------------AUGAAGGUCUAUAUAGUCAGAAC------------------------------------- l=23 a=0 c*
----------------------------UCAGAACGGAUUUCCUUUGUA----------------------- l=21 a=1 ma
------------AUGAAGGUCUAUAUAGUCAGAAC------------------------------------- l=23 a=0 ma*

----------------------------UCAGAACGGAUUUCCUUUGUA----------------------- l=21 a=1 (ma)

mb-00010
ax-1011011
ku-01
ss-110110011100
fn-001
